Instructions for use of Greedy Outlier Removal Program:

Input Specifications:

See Sample Data file:
File must include:
> LIST LABEL
at top of gene list.

Followed by the list of Arabidopsis Genes.
Specify splice variants, or the gene will default to ~.1 variant for each gene.
It is also possible to use the GENEX gene names from the tree file.

Operation:
To run more than one list at a time, separate the lists by additional list labels.
Each of these lists will be be evaluated and output included in one file.

Used in conjunction with the JavaTreeView program and the datasets made available on this site,
it is possible to view the surrounding genes from the clusters detected with this program.
The parent node of the given gene list is included in the output after each gene removal.


Please provide feedback to the author arene@hawaii.edu